| Toolbar |
 | cut alignment. This button allows cutting the alignment by current consensus structure information. The resulting sequence alingment contains only collumns that are part of a binding in the consensus structure. This allows to calculate phylogenetic trees on highly structural conserved parts of the alignment for example. Please note, that the current selection has no effect for cutting the alignment, always the complete alignment is cutted based on the current consensus structure. |
| | conservation chooser. Use the slider to choose the conservation percentage the consensus structure is calculated on. |
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| Structure Tree |
 | sequence. Click on this item to open/collapse the structural information. |
 | non helical regions. Click on this item to mark all non helical regions within this sequence. |
 | helical region. Click on this item to mark the helical region. |
 | sidearm. Click on this item to mark this sidearm within the sequence. |