| Toolbar |
 | cut alignment. This button allows cutting the alignment by current consensus structure information. The resulting sequence alingment contains only collumns that are part of a binding in the consensus structure. This allows to calculate phylogenetic trees on highly structural conserved parts of the alignment for example. |
| | conservation chooser. Use the slider to choose the conservation percentage the consensus structure is calculated on. |
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| Structure Tree |
 | sequence. Click on this item to open/collapse the structural information. |
 | non helical regions. Click on this item to mark non helical regions. |
 | helical region. Click on this item to mark the helical region. |
 | sidearm. Click on this item to mark the sidearm. |