4SALE - A tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing

Philipp N. Seibel, Jörg Schultz, Tobias Müller, Thomas Dandekar & Matthias Wolf

Department of Bioinformatics, Biocenter, University of Würzburg, Germany

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Structure Inspector
4SALE Palettes

### 4SALE - Palettes

#### Task Manager

The Task Manager shows all running and completed tasks, such as alignment calculations, running remote tools etc.

#### Search

The Search palette enables searching on sequence and secondary structure information.

#### Rearrange Sequences

The Rearrange Sequences palette allows rearranging sequences in the alignment window.

#### ITS2Query

The ITS2Query palette allows easy querying and loading sequences from the ITS2 Database. (http://its2.bioapps.biozentrum.uni-wuerzburg.de)

#### CBC Table

The CBC Table allows analyzing compensatory base changes within the current sequence and secondary structure alignment. The table contains the counts of CBCs between two sequences. Click on a table cell to highlight the CBCs in the sequence and secondary structure alignment window.

Note: To use a palette, there must be an activated alignment window.